PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921543.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 307aa    MW: 32476.5 Da    PI: 6.3573
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921543.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601011.1e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+
  XP_010921543.1   4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_010921543.1  99 AVEAVLKGA 107
                     ***998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.3E-931302IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.0683109IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIM QIPSETAAST  120
PVPPLKAYDI RHVSKDADAA AAAASRAAAE LHKISKSRTR FKRPAATKSK PGAVLVEGAE  180
PDSARGCDLS WPRCYPVDFK RAGSHESAGS QATEPDAGEA AAAAGGGDGD SRENESEFSG  240
ETGEGSHVSQ GDPNLAEESE VALELTLGFE PVSRAGRTTR PAAEVRCDVS SWGSDTCRMD  300
LGLELPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921543.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8863e-89LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM5WTB81e-110M5WTB8_PRUPE; Uncharacterized protein
STRINGGLYMA18G53440.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-83LOB domain-containing protein 41